# -*- perl -*-
#
# Copyright (C) 2011-2021 Alexis Bienvenüe <paamc@passoire.fr>
#
# This file is part of Auto-Multiple-Choice
#
# Auto-Multiple-Choice is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 2 of
# the License, or (at your option) any later version.
#
# Auto-Multiple-Choice is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with Auto-Multiple-Choice.  If not, see
# <http://www.gnu.org/licenses/>.

use warnings;
use 5.012;

package AMC::DataModule::capture;

# AMC capture data management.

# This module is used to store (in a SQLite database) and handle all
# data concerning data capture (automatic and manual).

# TABLES:
#
# page describes how a page scan fits with a question document page.
#
# * src is the scan file name (this is a raster image file, like
#   tiff. Usualy a each scan file contains only one page). This
#   filename is absolute, with some shortcuts for portability: %PROJET
#   is the project directory, %PROJETS is the directory where all
#   projects are stored, and %HOME is the user home directory.
#
# * student is the student number of the question page corresponding
#   to the scan
#
# * page is the page number of the question page corresponding
#   to the scan (the page number starts from 1 for eevery student)
#
# * copy is the copy number of this page. When each student has his
#   own student number (question paper is printed from AMC and not
#   photocopied), copy is null. When all the question papers are
#   photocopied from, say, the three first versions of the subject,
#   student is the number from 1 to 3 identifying the original
#   question paper student number, and copy is an integer used to
#   differentiate the completed answer sheets coming from the
#   photocopied answer sheets from the same question paper.
#
# * timestamp_auto is the time when the scan processing was done
#   (using time function: seconds from Jan 1 1970), or -1 if there is
#   no automatic data capture for this page.
#
# * timestamp_manual is the time when the last manual data capture was
#   done (set to -1 if none).
#
# * a,b,c,d,e,f are the 6 parameters describing the linear transform
#   that taked the positions from the question paper to the positions
#   from the scan. Thus, if (x,y) are coordinates of a point on the
#   question paper, the corresponding pixel on the scan file should be
#   near coordinates (x',y'), with
#
#     x' = a*x + b*y + e
#     y' = c*x + d*y + f
#
# * mse is the mean square error for the four corner marks on the page
#   to be perfectly transported from the question paper to the scan by
#   the linear transform defined by (a,b,c,d,e,f).
#
# * layout_image is the filename of the scan image with added drawings
#   showing where boxes are detected. This is a relative filename; the
#   file should be in the %PROJET/cr directory (cr subdirectory of the
#   project directory).
#
# * annotated is the filename of the annotated jpeg of the page, when
#   available. This is a relative filename; the file should be in the
#   %PROJET/cr/corrections/jpg directory.
#
# * timestamp_annotate is the time the annotated page was produced.
#
# * overwritten is the number of times capture data has been
#   overwritten

# zone describes the different objects that can be found on the scans
# (corner marks, boxes, name field)
#
# * zoneid is an object identifier, also used for the position table.
#
# * student
# * page
# * copy    are the same as for the page table
#
# * type is the object type: ZONE_FRAME for the zone made from the 4
#   corner centers, ZONE_NAME for the name field zone, ZONE_DIGIT for
#   binary boxes at the top of the page identifying the page, ZONE_BOX
#   for the answers boxes to be filled (or not) by the students. The
#   constants ZONE_* are defined later.
#
# * id_a is the question number for ZONE_BOX, or the number id for
#   ZONE_DIGIT. It does not have any meaning for other objects.
#
# * id_b is the answer number for ZONE_BOX, and the digit number for
#   ZONE_DIGIT.
#
# * total is the total number of pixels from the scan inside the zone,
#   or -1 if not measured.
#
# * black is the number of black pixels from the scan inside the zone,
#   or -1 if not measured.
#
# * manual is 1 if the box is declared to be filled by a manual data
#   capture action, 0 if declared not to be filled, and -1 if no
#   manual data capture occured for this zone.
#
# * image is the name of the zone image file, extracted from the
#   scan. This filename is relative to the %PROJET/cr/zooms directory
#   (%PROJET is here the project directory).

# position retains the position of the zones corners on the scan
#
# * zoneid is the zone identifier, as used in the zone table.
#
# * corner is the corner number (1=TL, 2=TR, 3=BR, 4=BL)
#
# * x
# * y  are the coordinates of the zone corner on the scan.
#
# * type is the type of the considered corner: POSITION_BOX if one
#   considers the corner of the box/zone, and POSITION_MEASURE if one
#   considers the corner of the measuring zone (a zone slightly
#   reduced from the box zone, so as not to consider box contours when
#   measuring the number of black pixels).

# failed lists all the scans that could not be processed, as the page
# numbers (student number, page number and check code, as binary
# boxes) could not be read on the top of the page.
#
# * filename is the scan filename.
#
# * timestamp is the time when processing was done.

use Exporter qw(import);

use constant {
    ZONE_FRAME => 1,
    ZONE_NAME  => 2,
    ZONE_DIGIT => 3,
    ZONE_BOX   => 4,

    POSITION_BOX     => 1,
    POSITION_MEASURE => 2,
};

our @EXPORT_OK = qw(ZONE_FRAME ZONE_NAME ZONE_DIGIT ZONE_BOX
  POSITION_BOX POSITION_MEASURE);
our %EXPORT_TAGS = (
    zone     => [qw/ZONE_FRAME ZONE_NAME ZONE_DIGIT ZONE_BOX/],
    position => [qw/POSITION_BOX POSITION_MEASURE/],
);

use DBI qw(:sql_types);

use AMC::Basic;
use AMC::DataModule;
use AMC::DataModule::layout ':flags';
use XML::Simple;

our @ISA = ("AMC::DataModule");

use_gettext();

sub version_current {
    return (5);
}

sub version_upgrade {
    my ( $self, $old_version ) = @_;
    if ( $old_version == 0 ) {

        # Upgrading from version 0 (empty database) to version 1 :
        # creates all the tables.

        debug "Creating capture tables...";
        $self->sql_do( "CREATE TABLE IF NOT EXISTS "
              . $self->table("page")
              . " (src TEXT, student INTEGER, page INTEGER, copy INTEGER DEFAULT 0, timestamp_auto INTEGER DEFAULT 0, timestamp_manual INTEGER DEFAULT 0, a REAL, b REAL, c REAL, d REAL, e REAL, f REAL, mse REAL, layout_image TEXT, annotated TEXT, timestamp_annotate INTEGER, PRIMARY KEY (student,page,copy))"
        );
        $self->sql_do( "CREATE TABLE IF NOT EXISTS "
              . $self->table("zone")
              . " (zoneid INTEGER PRIMARY KEY, student INTEGER, page INTEGER, copy INTEGER, type INTEGER, id_a INTEGER, id_b INTEGER, total INTEGER DEFAULT -1, black INTEGER DEFAULT -1, manual REAL DEFAULT -1, image TEXT)"
        );
        $self->sql_do( "CREATE TABLE IF NOT EXISTS "
              . $self->table("position")
              . " (zoneid INTEGER, corner INTEGER, x REAL, y REAL, type INTEGER, PRIMARY KEY (zoneid,corner,type))"
        );
        $self->sql_do( "CREATE TABLE IF NOT EXISTS "
              . $self->table("failed")
              . " (filename TEXT UNIQUE, timestamp INTEGER)" );
        $self->populate_from_xml;

        return (1);
    } elsif ( $old_version == 1 ) {

        # Includes zoom files in the database

        debug "Including zoom files in the database...";
        $self->sql_do( "ALTER TABLE "
              . $self->table("zone")
              . " ADD COLUMN imagedata BLOB" );

        my $list = $self->get_image_paths(ZONE_BOX);
        my $nn   = 1 + $#{$list};

        if ( $nn > 0 ) {
            $self->progression( 'begin',
                __ "Including zooms in the database..." );

            my $ii = 0;
            for my $i ( @{$list} ) {
                if ( $i->{image} ) {
                    my $f =
                        $self->{data}->{directory}
                      . "/../cr/zooms/"
                      . $i->{image};
                    if ( defined($f) && -f $f ) {
                        $self->set_image( $i->{zoneid}, file_content($f) );
                    }
                }
                $ii++;
                $self->progression( 'fraction', $ii / $nn );
            }

            $self->progression('end');
        }

        return (2);
    } elsif ( $old_version == 2 ) {
        $self->progression( 'begin',
            __("Building capture database indexes...") );
        $self->sql_do( "CREATE UNIQUE INDEX IF NOT EXISTS "
              . $self->index("index_zone") . " ON "
              . $self->table( "zone", "self" )
              . " (student,page,copy,type,id_a,id_b)" );

        $self->progression('end');
        return (3);
    } elsif ( $old_version == 3 ) {
        $self->progression( 'begin',
            __("Building capture database indexes...") );
        $self->sql_do( "CREATE INDEX IF NOT EXISTS "
              . $self->index("index_zone_nopage") . " ON "
              . $self->table( "zone", "self" )
              . " (student,copy,type,id_a,id_b)" );

        $self->progression('end');
        return (4);
    } elsif ( $old_version == 4 ) {
        $self->sql_do( "ALTER TABLE "
              . $self->table("page")
              . " ADD COLUMN overwritten INTEGER DEFAULT 0" );
        return (5);
    }
    return ('');
}

# Internal function used by populate_from_xml to put all corners
# coordinates of a particular box

sub populate_position {
    my ( $self, $xml, $zoneid, $type ) = @_;

    return if ( !$xml );

    for my $corner ( keys %$xml ) {
        $self->statement('NEWPosition')->execute(
            $zoneid, $corner,
            $xml->{$corner}->{x},
            $xml->{$corner}->{y}, $type
        );
    }
}

# populate_from_xml read the old format XML files (if any) and inserts
# them in the new SQLite database

sub populate_from_xml {
    my ($self) = @_;
    my $cr = $self->{data}->directory;
    $cr =~ s/\/[^\/]+\/?$/\/cr/;
    return if ( !-d $cr );

    $self->progression( 'begin',
        __ "Fetching data capture results from old format XML files..." );

    my $cordir = "$cr/corrections/jpg/";

    opendir( DIR, $cr ) || die "can't opendir $cr: $!";
    my @xmls = grep { /\.xml$/ && -s "$cr/" . $_ } readdir(DIR);
    closedir DIR;

    my $frac = 0;

  XML: for my $f (@xmls) {
        my $anx = XMLin(
            "$cr/" . $f,
            ForceArray => [ "analyse", "chiffre", "case", "id" ],
            KeepRoot   => 1,
            KeyAttr    => ['id']
        );
        next XML if ( !$anx->{analyse} );
      ID: for my $id ( keys %{ $anx->{analyse} } ) {
            my $an = $anx->{analyse}->{$id};
            my @ep = get_ep($id);
            my %oo;

            my @st = stat( "$cr/" . $f );
            $oo{timestamp} = $st[9];

            if ( $an->{manuel} ) {

                # This is a XML description of a manual data capture: no
                # position information, only ticked-or-not for all
                # boxes
                $self->set_page_manual( @ep, 0, $oo{timestamp} );

                for my $c ( keys %{ $an->{case} } ) {
                    my $case = $an->{case}->{$c};
                    $self->set_zone_manual( @ep, 0, ZONE_BOX,
                        $case->{question}, $case->{reponse}, $case->{r} );
                }
            } else {

                # This is a XML description of an automatic data
                # capture: contains full information about darkness and
                # positions of the boxes
                $oo{mse} = $an->{transformation}->{mse};
                for my $k (qw/a b c d e f/) {
                    $oo{$k} = $an->{transformation}->{parametres}->{$k};
                }

                $self->set_page_auto( $an->{src}, @ep, 0,
                    map { $oo{$_} } (qw/timestamp a b c d e f mse/) );

                if ( $an->{cadre} ) {
                    my $zoneid =
                      $self->get_zoneid( @ep, 0, ZONE_FRAME, 0, 0, 1 );
                    $self->populate_position( $an->{cadre}->{coin},
                        $zoneid, POSITION_BOX );
                }
                if ( $an->{nom} ) {
                    my $zoneid =
                      $self->get_zoneid( @ep, 0, ZONE_NAME, 0, 0, 1 );
                    $self->populate_position( $an->{nom}->{coin},
                        $zoneid, POSITION_BOX );

                    # Look if the namefield image is present...
                    my $nf = "nom-" . id2idf($id) . ".jpg";
                    if ( -f "$cr/$nf" ) {
                        $self->set_zone_auto_id_without_imagedata( $zoneid, -1,
                            -1, $nf );
                    }
                }

                for my $c ( keys %{ $an->{case} } ) {
                    my $case   = $an->{case}->{$c};
                    my $zoneid = $self->get_zoneid( @ep, 0, ZONE_BOX,
                        $case->{question}, $case->{reponse}, 1 );

                    my $zf = sprintf( "%d-%d/%d-%d.png",
                        @ep, $case->{question}, $case->{reponse} );
                    $zf = '' if ( !-f "$cr/zooms/$zf" );

                    $self->set_zone_auto_id_without_imagedata( $zoneid,
                        $case->{pixels}, $case->{pixelsnoirs}, $zf );

                    $self->populate_position( $case->{coin}, $zoneid,
                        POSITION_BOX );
                    $self->populate_position( $an->{casetest}->{$c}->{coin},
                        $zoneid, POSITION_MEASURE );
                }

                # Look if annotated scan is present...
                my $af = "page-" . id2idf($id) . ".jpg";
                if ( -f $cordir . $af ) {
                    my @sta = stat( $cordir . $af );
                    $self->set_annotated( @ep, 0, $af, $sta[9] );
                }

                # Look if layout scan is present...
                if ( -f $cr . '/' . $af ) {
                    my @sta = stat( $cr . '/' . $af );
                    $self->set_layout_image( @ep, 0, $af, $sta[9] );
                }
            }
        }

        $frac++;
        $self->progression( 'fraction', $frac / ( $#xmls + 1 ) );
    }

    $self->progression('end');
}

# defines all the SQL statements that will be used

sub define_statements {
    my ($self)     = @_;
    my $t_page     = $self->table("page");
    my $t_zone     = $self->table("zone");
    my $t_position = $self->table("position");
    my $t_failed   = $self->table("failed");
    my $t_box        = $self->table( "box",       "layout" );
    my $t_namefield  = $self->table( "namefield", "layout" );
    my $t_layoutpage = $self->table( "page",      "layout" );
    my $t_lnf        = $self->table( "namefield", "layout" );
    $self->{statements} = {
        NEWPageAuto => {
                sql => "INSERT INTO $t_page"
              . " (src,student,page,copy,timestamp_auto,a,b,c,d,e,f,mse)"
              . " VALUES (?,?,?,?,?,?,?,?,?,?,?,?)"
        },
        NEWPageManual => {
                sql => "INSERT INTO $t_page"
              . " (student,page,copy,timestamp_manual)"
              . " VALUES (?,?,?,?)"
        },
        SetPageAuto => {
                sql => "UPDATE $t_page"
              . " SET src=?, timestamp_auto=?, a=?, b=?, c=?, d=?, e=?, f=?, mse=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        overwritePage => {
                sql => "UPDATE "
              . $t_page
              . " SET overwritten=overwritten+1"
              . " WHERE student=? AND page=? AND copy=?"
        },
        overwriteClear => { sql => "UPDATE $t_page SET overwritten=0" },
        SetPageManual  => {
                sql => "UPDATE $t_page"
              . " SET timestamp_manual=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        NEWZone => {
                sql => "INSERT INTO $t_zone"
              . " (student,page,copy,type,id_a,id_b)"
              . " VALUES (?,?,?,?,?,?)"
        },
        getZoneID => {
            sql => "SELECT zoneid FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=? AND id_a=? AND id_b=?"
        },
        zonesCount => {
            sql => "SELECT COUNT(*) FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
        },
        zone => {
                sql => "SELECT COUNT(*) FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
              . " AND id_a=? AND id_b=?"
        },
        NEWPosition => {
                sql => "INSERT OR REPLACE INTO $t_position"
              . " (zoneid,corner,x,y,type)"
              . " VALUES (?,?,?,?,?)"
        },
        setPosition => {
            sql => "UPDATE $t_position"
              . " SET x=?, y=? WHERE zoneid=? AND corner=? AND type=?"
        },
        getPage => {
            sql => "SELECT * FROM $t_page"
              . " WHERE student=? AND page=? AND copy=?"
        },
        setZoneManual =>
          { sql => "UPDATE $t_zone" . " SET manual=? WHERE zoneid=?" },
        setZoneAuto => {
            sql => "UPDATE $t_zone"
              . " SET total=?, black=?, image=?, imagedata=? WHERE zoneid=?"
        },
        setZoneAutoPrim => {
            sql => "UPDATE $t_zone"
              . " SET total=?, black=?, image=? WHERE zoneid=?"
        },
        nPages => {
            sql => "SELECT COUNT(*) FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
        },
        nPagesAuto =>
          { sql => "SELECT COUNT(*) FROM $t_page" . " WHERE timestamp_auto>0" },
        students => {
                sql => "SELECT student FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
              . " GROUP BY student ORDER BY student"
        },
        nCopies => {
                sql => "SELECT COUNT(*) FROM (SELECT student,copy FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
              . " GROUP BY student,copy)"
        },
        nOverwritten     => { sql => "SELECT SUM(overwritten) FROM $t_page" },
        overwrittenPages => {
                sql => "SELECT student,page,copy,overwritten,timestamp_auto"
              . " FROM $t_page WHERE overwritten>0"
              . " ORDER BY timestamp_auto DESC, student ASC, page ASC, copy ASC"
        },
        studentCopies => {
                sql => "SELECT student,copy FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
              . " GROUP BY student,copy ORDER BY student,copy"
        },
        maxCopy    => { sql => "SELECT MAX(copy) FROM $t_page" },
        maxAnswer  => { sql => "SELECT MAX(id_b) FROM $t_zone WHERE type=?" },
        pageCopies => {
                sql => "SELECT copy FROM $t_page"
              . " WHERE student=? AND page=? AND copy>=?"
              . " ORDER BY copy"
        },
        studentLastCopy => {
            sql => "SELECT MAX(copy) FROM $t_page"
              . " WHERE student=?"
        },
        pageLastCopy => {
            sql => "SELECT MAX(copy) FROM $t_page"
              . " WHERE student=? AND page=?"
        },
        pagesChanged => {
            sql => "SELECT student,page,copy FROM $t_page"
              . " WHERE timestamp_auto>? OR timestamp_manual>?"
        },
        pagesSummary => {
            sql =>
              "SELECT student,page,copy,src,mse,timestamp_auto,timestamp_manual"
              . ",CASE WHEN timestamp_auto>0 AND mse>? THEN ?"
              . "      ELSE ?"
              . "  END AS mse_color"
              . ",CASE WHEN timestamp_manual>0 THEN ?"
              . "      WHEN timestamp_auto>0 THEN ?"
              . "      ELSE ?"
              . "  END AS color"
              . ",CASE WHEN timestamp_manual>0 THEN timestamp_manual"
              . "      ELSE timestamp_auto"
              . "  END AS timestamp"
              . ",(SELECT MIN(ABS(1.0*black/total-?))"
              . "   FROM $t_zone"
              . "   WHERE $t_zone.student=$t_page.student"
              . "     AND $t_zone.page=$t_page.page AND $t_zone.copy=$t_page.copy"
              . "     AND $t_zone.type=? AND total>0) AS delta"
              . ",(SELECT MIN(ABS(1.0*black/total-?))"
              . "   FROM $t_zone"
              . "   WHERE $t_zone.student=$t_page.student"
              . "     AND $t_zone.page=$t_page.page AND $t_zone.copy=$t_page.copy"
              . "     AND $t_zone.type=? AND total>0) AS delta_up"
              . " FROM $t_page"
        },
        pages => {
            sql => "SELECT * FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
        },
        missingPages => {
            sql =>
"SELECT enter.student AS student,enter.page AS page ,$t_page.copy AS copy"
              . " FROM (SELECT student,page FROM $t_box WHERE role=1"
              . "       UNION SELECT student,page FROM $t_namefield) AS enter,"
              . "      $t_page"
              . " ON enter.student=$t_page.student"
              . " EXCEPT SELECT student,page,copy FROM $t_page"
              . " ORDER BY student,copy,page"
        },
        questionOnlyPages => {
            sql => "SELECT student,page,0 AS copy FROM $t_box WHERE role=2"
              . " EXCEPT SELECT student,page,0 AS copy FROM $t_box WHERE role=1"
        },
        noCapturePages => {
                sql => "SELECT student,page,0 AS copy FROM $t_box WHERE role=1"
              . " UNION SELECT student,page,0 AS copy FROM $t_namefield"
              . " EXCEPT SELECT student,page,copy FROM $t_page"
              . " WHERE timestamp_auto>0 OR timestamp_manual>0"
        },
        pageNearRatio => {
                sql => "SELECT MIN(ABS(1.0*black/total-?))"
              . " FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND total>0"
        },
        pageZones => {
            sql =>
"SELECT zoneid,id_a,id_b,total,black,manual,1 AS role FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
        },
        zonesImages => {
            sql => "SELECT image FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
        },
        imagePaths =>
          { sql => "SELECT zoneid,image FROM $t_zone WHERE type=?" },
        setImage =>
          { sql => "UPDATE $t_zone SET image='',imagedata=? WHERE zoneid=?" },
        zoomsTotalSize => {
            sql => "SELECT SUM(LENGTH(imagedata)) FROM $t_zone"
              . " WHERE type=?"
        },
        zoomsCleanup =>
          { sql => "UPDATE $t_zone SET imagedata=NULL WHERE type=?" },
        pageZonesAll => { sql => "SELECT * FROM $t_zone" . " WHERE type=?" },
        pageZonesAutoCount => {
                sql => "SELECT COUNT(*) FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
              . " AND total>0"
        },
        pageZonesD => {
                sql => "SELECT zoneid,id_a,id_b,total,black,manual"
              . " FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
              . " AND total>0"
              . " ORDER BY 1.0*black/total"
        },
        pageZonesDI => {
                sql => "SELECT *"
              . " FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
              . " AND total>0"
              . " ORDER BY 1.0*black/total"
        },
        zoneDarkness => {
            sql => "SELECT 1.0*black/total FROM $t_zone"
              . " WHERE zoneid=? AND total>0"
        },
        zoneImage => {
            sql => "SELECT image FROM $t_zone"
              . " WHERE student=? AND copy=? AND type=?"
        },
        setManualPage => {
                sql => "UPDATE $t_page"
              . " SET timestamp_manual=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        setManual => {
                sql => "UPDATE $t_zone"
              . " SET manual=?"
              . " WHERE student=? AND page=? AND copy=?"
              . " AND type=? AND id_a=? AND id_b=?"
        },
        setManualPageZones => {
                sql => "UPDATE $t_zone"
              . " SET manual=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        ticked => {
                sql => "SELECT CASE"
              . " WHEN manual >= 0 THEN manual"
              . " WHEN total<=0 THEN 0"
              . " WHEN black >= ? * total AND black <= ? * total THEN 1"
              . " ELSE 0"
              . " END FROM $t_zone"
              . " WHERE student=? AND copy=? AND type=? AND id_a=? AND id_b=?"
        },
        tickedSums => {
            sql =>
"SELECT * FROM (SELECT zone.id_a AS question,zone.id_b AS answer,SUM(CASE"
              . " WHEN why=\"V\" THEN 0"
              . " WHEN why=\"E\" THEN 0"
              . " WHEN zone.manual >= 0 THEN zone.manual"
              . " WHEN zone.total<=0 THEN 0"
              . " WHEN zone.black >= ? * zone.total AND zone.black <= ? * zone.total THEN 1"
              . " ELSE 0"
              . " END) AS nb"
              . " FROM $t_zone AS zone, scoring.scoring_score AS score"
              . " ON zone.student=score.student AND zone.copy=score.copy AND zone.id_a=score.question"
              . " WHERE zone.type=? GROUP BY zone.id_a,zone.id_b)"
              . " UNION"
              . " SELECT * FROM (SELECT question,\"invalid\" AS answer,"
              . " COUNT(*)-COUNT(NULLIF(why,\"E\")) AS nb"
              . " FROM scoring.scoring_score"
              . " GROUP BY question)"
              . " UNION"
              . " SELECT * FROM (SELECT question,\"empty\" AS answer,"
              . " COUNT(*)-COUNT(NULLIF(why,\"V\")) AS nb"
              . " FROM scoring.scoring_score"
              . " GROUP BY question)"
              . " UNION"
              . " SELECT * FROM (SELECT question,\"all\" AS answer,COUNT(*) AS nb"
              . " FROM scoring.scoring_score"
              . " GROUP BY question)"
        },
        tickedList => {
                sql => "SELECT CASE"
              . " WHEN manual >= 0 THEN manual"
              . " WHEN total<=0 THEN 0"
              . " WHEN black >= ? * total AND black <= ? * total THEN 1"
              . " ELSE 0"
              . " END FROM $t_zone"
              . " WHERE student=? AND copy=? AND type=? AND id_a=?"
              . " ORDER BY id_b"
        },
        tickedChars => { sql => "SELECT char FROM (SELECT id_b FROM $t_zone"
              . "       WHERE student=? AND copy=? AND id_a=? AND type=?"
              . "       AND (manual=1 OR"
              . "            manual<0 AND (black >= ? * total AND black <= ? * total))"
              . " ),( SELECT answer,char FROM "
              . $self->table( "box", "layout" )
              . "       WHERE student=? AND question=? AND role=?)"
              . " ON id_b=answer ORDER BY id_b" },
        tickedPage => {
                sql => "SELECT CASE"
              . " WHEN manual >= 0 THEN manual"
              . " WHEN total<=0 THEN 0"
              . " WHEN black >= ? * total AND black <= ? * total THEN 1"
              . " ELSE 0"
              . " END,id_a,id_b FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=? AND type=?"
        },
        zoneCorner => {
            sql => "SELECT x,y FROM $t_position"
              . " WHERE zoneid=? AND type=? AND corner=?"
        },
        zoneCenter => {
            sql => "SELECT AVG(x),AVG(y) FROM $t_position"
              . " WHERE zoneid=? AND type=?"
        },
        zoneDist => {
                sql => "SELECT AVG((x-?)*(x-?)+(y-?)*(y-?))"
              . " FROM $t_position"
              . " WHERE zoneid=? AND type=?"
        },
        zoneImages => {
            sql =>
"SELECT zoneid, p.student as student, p.copy as copy, image, imagedata, timestamp_auto"
              . " FROM "
              . $self->table("zone")
              . " as z,"
              . "      "
              . $self->table("page") . " as p"
              . " ON z.student=p.student AND z.page=p.page AND z.copy=p.copy"
              . " WHERE type=?"
        },
        getAnnotated => {
                sql => "SELECT annotated,timestamp_annotate,student,page,copy"
              . " FROM $t_page"
              . " WHERE timestamp_annotate>0"
              . " ORDER BY student,copy,page"
        },
        getAnnotatedFiles => {
                sql => "SELECT annotated"
              . " FROM $t_page"
              . " WHERE timestamp_auto>0"
              . " ORDER BY student,copy,page"
        },
        getAnnotatedPage => {
                sql => "SELECT annotated"
              . " FROM $t_page"
              . " WHERE timestamp_annotate>0"
              . " AND student=? AND page=? AND copy=?"
        },
        annotatedCount => {
            sql => "SELECT COUNT(*) FROM $t_page"
              . " WHERE timestamp_annotate>0 AND annotated NOT NULL"
        },
        getScanPage => {
                sql => "SELECT src"
              . " FROM $t_page"
              . " WHERE student=? AND page=? AND copy=?"
        },
        setAnnotated => {
                sql => "UPDATE $t_page"
              . " SET annotated=?, timestamp_annotate=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        setAnnotatedPageOutdated => {
                sql => "UPDATE $t_page"
              . " SET timestamp_annotate=0"
              . " WHERE student=? AND page=? AND copy=?"
        },
        setAnnotatedCopyOutdated => {
                sql => "UPDATE $t_page"
              . " SET timestamp_annotate=0"
              . " WHERE student=? AND copy=?"
        },
        setLayout => {
                sql => "UPDATE $t_page"
              . " SET layout_image=?"
              . " WHERE student=? AND page=? AND copy=?"
        },
        getLayout => {
            sql => "SELECT layout_image FROM $t_page"
              . " WHERE student=? AND page=? AND copy=?"
        },
        questionHasZero => {
                sql => "SELECT COUNT(*) FROM $t_zone"
              . " WHERE student=? AND copy=? AND type=? AND id_a=?"
              . " AND id_b=0"
        },
        Failed => {
                sql => "INSERT OR REPLACE INTO $t_failed"
              . " (filename,timestamp)"
              . " VALUES (?,?)"
        },
        failedList   => { sql => "SELECT * FROM $t_failed" },
        failedNb     => { sql => "SELECT COUNT(*) FROM $t_failed" },
        deleteFailed => { sql => "DELETE FROM $t_failed WHERE filename=?" },
        deletePagePositions => {
                sql => "DELETE FROM $t_position"
              . " WHERE zoneid IN"
              . " (SELECT zoneid FROM $t_zone WHERE student=? AND page=? AND copy=?)"
        },
        deletePageZones => {
            sql => "DELETE FROM $t_zone"
              . " WHERE student=? AND page=? AND copy=?"
        },
        deletePage => {
            sql => "DELETE FROM $t_page"
              . " WHERE student=? AND page=? AND copy=?"
        },
        pagesStudent => {
                sql => "SELECT a.page AS page,a.subjectpage AS subjectpage,"
              . "             b.annotated AS annotated"
              . " FROM (SELECT * FROM $t_layoutpage WHERE student=?) AS a"
              . " LEFT JOIN"
              . "      (SELECT * FROM $t_page"
              . "        WHERE student=? AND copy=? AND timestamp_annotate>0) AS b"
              . " ON a.page=b.page ORDER BY a.page"
        },
        nameFields => {
            sql => "SELECT a.student AS student,a.page AS page,a.copy AS copy,"
              . "             b.image  AS image FROM"
              . " ( SELECT c.student,c.page,c.copy FROM"
              . "     (SELECT * FROM $t_page WHERE timestamp_auto>0 OR timestamp_manual>0 )"
              . "      AS c, $t_lnf AS l"
              . "     ON c.student=l.student AND c.page=l.page ) AS a"
              . " LEFT OUTER JOIN"
              . " ( SELECT student,page,copy,image FROM $t_zone WHERE type=? ) AS b"
              . " ON a.student=b.student AND a.page=b.page AND a.copy=b.copy"
              . " ORDER BY student, page, copy"
        },
        photocopy => { sql => "SELECT COUNT(*) FROM $t_page WHERE copy>0" },
        zonesBBox => {
                sql => "SELECT z.id_a AS question,z.id_b AS answer,"
              . "   min(p.x) AS xmin,max(p.x) AS xmax,"
              . "   min(p.y) AS ymin,max(p.y) AS ymax"
              . " FROM $t_zone AS z,$t_position as p"
              . " ON z.zoneid=p.zoneid"
              . " WHERE z.student=? AND z.page=? AND z.copy=?"
              . "   AND z.type=? AND p.type=?"
              . " GROUP BY z.zoneid"
        },
        zonesCorners => {
                sql => "SELECT z.id_a AS question,z.id_b AS answer,"
              . "   p.x AS x,p.y AS y,p.corner AS corner"
              . " FROM $t_zone AS z,$t_position as p"
              . " ON z.zoneid=p.zoneid"
              . " WHERE z.student=? AND z.page=? AND z.copy=?"
              . "   AND z.type=? AND p.type=?"
              . " ORDER BY z.zoneid,p.corner"
        },
    };
    $self->{statements}->{pageSummary} =
      { sql => $self->{statements}->{pagesSummary}->{sql}
          . " WHERE student=? AND page=? AND copy=?" };
    $self->{statements}->{pagesSummary}->{sql} .= " ORDER BY student,page,copy";
}

# get_page($student,$page,$copy) returns all columns from the row with
# given ($student,$page,$copy) in table capture_page. If such a row
# exists, a hashref is returned. If not, undef is returned.

sub get_page {
    my ( $self, $student, $page, $copy ) = @_;
    return (
        $self->dbh->selectrow_hashref(
            $self->statement('getPage'),
            {}, $student, $page, $copy
        )
    );
}

# set_page_auto(...) fills one row of the page table, and returns 1 if
# some previous data has been overwritten.

sub set_page_auto {
    my ( $self, $src, $student, $page, $copy,
        $timestamp, $a, $b, $c, $d, $e, $f, $mse )
      = @_;
    if ( $self->get_page( $student, $page, $copy ) ) {
        $self->statement('SetPageAuto')->execute(
            $src, $timestamp, $a,   $b,       $c,    $d,
            $e,   $f,         $mse, $student, $page, $copy
        );
        return (1);
    } else {
        $self->statement('NEWPageAuto')
          ->execute( $src, $student, $page, $copy,
            $timestamp, $a, $b, $c, $d, $e, $f, $mse );
        return (0);
    }
}

# tag_overwritten(...) tags a page data as overwritten

sub tag_overwritten {
    my ( $self, $student, $page, $copy ) = @_;
    $self->statement('overwritePage')->execute( $student, $page, $copy );
}

# sep_page_manual($student,$page,$copy,$timestamp) sets the timestamp
# for a manual data capture for a particular page. With no $timestamp
# argument, present time is used.

sub set_page_manual {
    my ( $self, $student, $page, $copy, $timestamp ) = @_;
    $timestamp = time() if ( !defined($timestamp) );
    if ( $self->get_page( $student, $page, $copy ) ) {
        $self->statement('SetPageManual')
          ->execute( $timestamp, $student, $page, $copy );
    } else {
        $self->statement('NEWPageManual')
          ->execute( $student, $page, $copy, $timestamp );
    }
}

# get_zoneid($student,$page,$copy,$type,$id_a,$id_b,$create) gets the
# zone identifier corresponding to a particular zone. If $create is
# true, the identifier is created if not yet present in the database.

sub get_zoneid {
    my ( $self, $student, $page, $copy, $type, $id_a, $id_b, $create ) = @_;
    my $r = $self->dbh->selectrow_arrayref( $self->statement('getZoneID'),
        {}, $student, $page, $copy, $type, $id_a, $id_b );
    if ($r) {
        return ( $r->[0] );
    } else {
        if ($create) {
            $self->statement('NEWZone')
              ->execute( $student, $page, $copy, $type, $id_a, $id_b );
            return ( $self->dbh->sqlite_last_insert_rowid() );
        } else {
            return (undef);
        }
    }
}

# set_zone_manual($student,$page,$copy,$type,$id_a,$id_b,$manual) sets
# the manual value (ticked or not) for a particular zone

sub set_zone_manual {
    my ( $self, $student, $page, $copy, $type, $id_a, $id_b, $manual ) = @_;
    my $zoneid =
      $self->get_zoneid( $student, $page, $copy, $type, $id_a, $id_b, 1 );
    $self->statement('setZoneManual')->execute( $manual, $zoneid );
}

# set_zone_auto(...,$total,$black,$image,$image_data) sets automated
# data capture results for a particular zone.

sub set_zone_auto {
    my (
        $self, $student, $page,  $copy,  $type, $id_a,
        $id_b, $total,   $black, $image, $image_data
    ) = @_;
    $self->set_zone_auto_id(
        $self->get_zoneid( $student, $page, $copy, $type, $id_a, $id_b, 1 ),
        $total, $black, $image, $image_data );
}

sub set_zone_auto_id {
    my ( $self, $zoneid, $total, $black, $image, $image_data ) = @_;
    my $sth = $self->statement('setZoneAuto');
    $sth->bind_param( 1, $total );
    $sth->bind_param( 2, $black );
    $sth->bind_param( 3, $image );
    $sth->bind_param( 4, $image_data, SQL_BLOB );
    $sth->bind_param( 5, $zoneid );
    $sth->execute();
}

sub set_zone_auto_id_without_imagedata {
    my ( $self, $zoneid, $total, $black, $image ) = @_;
    my $sth = $self->statement('setZoneAutoPrim');
    $sth->bind_param( 1, $total );
    $sth->bind_param( 2, $black );
    $sth->bind_param( 3, $image );
    $sth->bind_param( 4, $zoneid );
    $sth->execute();
}

# n_pages returns the number of copies for which a data capture (manual
# or auto) is declared.

sub n_copies {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('nCopies') ) );
}

# n_overwritten returns the total number of overwritten pages

sub n_overwritten {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('nOverwritten') ) );
}

# clear_overwritten clears overwritten status of all pages

sub clear_overwritten {
    my ($self) = @_;
    $self->statement('overwriteClear')->execute();
}

# overwritten_pages() returns an arrayref of hashrefs with all pages
# which have some overwritten data

sub overwritten_pages {
    my ($self) = @_;
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('overwrittenPages'),
            { Slice => {} }
        )
    );
}

sub overwritten_pages_transaction {
    my ($self) = @_;
    $self->begin_read_transaction;
    my $r = $self->overwritten_pages;
    $self->end_transaction;
    return ($r);
}

# n_pages returns the number of pages for which a data capture (manual
# or auto) is declared.

sub n_pages {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('nPages') ) );
}

# n_pages_transaction calls n_pages inside a SQLite transaction.

sub n_pages_transaction {
    my ($self) = @_;
    $self->begin_read_transaction;
    my $n = $self->n_pages;
    $self->end_transaction;
    return ($n);
}

# students returns the list of students numbers for which a data
# capture is declared.

sub students {
    my ($self) = @_;
    return ( $self->sql_list( $self->statement('students') ) );
}

# student_copies returns a list of [student,copy] for which a data
# capture is declared.

sub student_copies {
    my ($self) = @_;
    return (
        @{
            $self->dbh->selectall_arrayref( $self->statement('studentCopies') )
        }
    );
}

# students_transaction calls students inside a SQLite transaction.

sub students_transaction {
    my ($self) = @_;
    $self->begin_read_transaction;
    my @r = $self->students;
    $self->end_transaction;
    return (@r);
}

# n_pages_auto returns the number of pages for which a automated data
# capture occured.

sub n_pages_auto {
    my ($self) = @_;
    return ( $self->sql_list( $self->statement('nPagesAuto') ) );
}

# page_sensitivity($student,$page,$copy,$darkness_threshold,$darkness_threshold_up)
# returns a sensitivity value for the page automated data
# capture. When this value is low (near 0), black and white boxes have
# darkness values far away from the threshold, and thus one can think
# that it is well recognized if the boxes are ticked or not. With high
# values of the sensitivity (the maximal value is 10), ticked boxes
# are not robustly detected: if one changes a little the darkness
# threshold, boxes can pass from the ticked to not-ticked state or
# vice versa.

sub sensitivity_down {
    my ( $delta, $threshold ) = @_;
    return ( defined($delta)
          && $threshold > 0
        ? 10 * ( $threshold - $delta ) / $threshold
        : undef );
}

sub sensitivity_up {
    my ( $delta, $threshold ) = @_;
    return ( defined($delta)
          && $threshold < 1 ? sensitivity( $delta, 1 - $threshold ) : undef );
}

sub sensitivity {
    my ( $delta, $threshold, $delta_up, $threshold_up ) = @_;
    my $s    = sensitivity_down( $delta, $threshold );
    my $s_up = sensitivity_up( $delta_up, $threshold_up );
    return ( defined($s_up) && ( !defined($s) || $s_up > $s ) ? $s_up : $s );
}

sub page_sensitivity {
    my ( $self, $student, $page, $copy, $darkness_threshold,
        $darkness_threshold_up )
      = @_;
    die "Missing parameters in pqge_sensitivity call"
      if ( !defined($darkness_threshold_up) );
    my $delta = $self->sql_single( $self->statement('pageNearRatio'),
        $darkness_threshold, $student, $page, $copy );
    my $delta_up = $self->sql_single( $self->statement('pageNearRatio'),
        $darkness_threshold_up, $student, $page, $copy );
    return (
        sensitivity(
            $delta, $darkness_threshold, $delta_up, $darkness_threshold_up
        )
    );
}

# page_summary($student,$page,$copy,%options) returns a hash %s giving
# some summarized information about the page automated data capture
# process:
#
# $s{mse} is the mean square error of the transform from question
# paper coordinates to scan coordinates
#
# $s{mse_color} is 'red' if the MSE exceeds
# $options{mse_threshold}, and undef otherwise
#
# $s{color} is blue if some automated data capture occured for this
# page, green if some manual data capture occured, and undef
# otherwise.
#
# $s{update} is a textual reprsentation of the date when the last
# data capture occured.
#
# $s{sensitivity} is the sensitivity (see function page_sensitivity).
#
# $s{sensitivity} is 'red' is the sensitivity exceeds
# $options{sensitivity_threshold}, undef otherwise.
#
# $s{why} (only available if $options{why} is true) collects all
# 'why' attributes from all qeustions on the page (from the scoring table)

# summaries returns a reference to an array containing the summaries
# of all pages.

sub compute_summaries {
    my ( $self, $r, %oo ) = @_;

    # compute some more variables from the SQL result
    for my $p (@$r) {
        $p->{mse_string} = (
            $p->{timestamp_auto} > 0
            ? sprintf(
                $p->{timestamp_manual} > 0 ? "(%.01f)" : "%.01f",
                $p->{mse}
              )
            : "---"
        );
        $p->{sensitivity} = sensitivity(
            $p->{delta},    $oo{darkness_threshold},
            $p->{delta_up}, $oo{darkness_threshold_up}
        );
        $p->{sensitivity_string} = (
            defined( $p->{sensitivity} )
            ? sprintf( "%.1f", $p->{sensitivity} )
            : "---" );
        $p->{sensitivity_color} = (
            defined( $p->{sensitivity} )
            ? ( $p->{sensitivity} > $oo{sensitivity_threshold} ? 'red' : undef )
            : undef
        );
    }
    if ( $oo{why} ) {
        $self->require_module("layout");
        my %why = ();
        for my $w ( $self->module("scoring")->pages_why() ) {
            $why{ pageids_string( $w->{student}, $w->{page}, $w->{copy} ) } =
              $w->{why};
        }
        for my $p (@$r) {
            $p->{why} =
              $why{ pageids_string( $p->{student}, $p->{page}, $p->{copy} ) };
        }
    }
    return ($r);
}

sub page_summary {
    my ( $self, $student, $page, $copy, %oo ) = @_;
    my $r = $self->dbh->selectall_arrayref(
        $self->statement('pageSummary'), { Slice => {} },
        $oo{mse_threshold},         'red',
        undef,                      'lightblue',
        'lightgreen',               undef,
        $oo{darkness_threshold},    ZONE_BOX,
        $oo{darkness_threshold_up}, ZONE_BOX,
        $student,                   $page,
        $copy,
    );
    if ( $r && $r->[0] ) {
        $r = $self->compute_summaries( $r, %oo );
        return ( %{ $r->[0] } );
    } else {
        return ();
    }
}

sub summaries {
    my ( $self, %oo ) = @_;
    my $r = $self->dbh->selectall_arrayref(
        $self->statement('pagesSummary'), { Slice => {} },
        $oo{mse_threshold},         'red',
        undef,                      'lightblue',
        'lightgreen',               undef,
        $oo{darkness_threshold},    ZONE_BOX,
        $oo{darkness_threshold_up}, ZONE_BOX,
    );
    return ( $self->compute_summaries( $r, %oo ) );
}

# zone_drakness($zoneid) return the darkness (from 0 to 1) for a
# particular zone.

sub zone_darkness {
    my ( $self, $zoneid ) = @_;

    return ( $self->sql_single( $self->statement('zoneDarkness'), $zoneid ) );
}

# ticked($student,$copy,$question,$answer,$darkness_threshold,$darkness_threshold_up)
# returns 1 if the darkness of a particular zone exceeds
# $darkness_threshold and is less than $darkness_threshold_up, and 0
# otherwise. If a manual data capture occured for this zone, the
# darkness is not considered and the manual result is given instead.

sub ticked {
    my ( $self, $student, $copy, $question, $answer,
        $darkness_threshold, $darkness_threshold_up )
      = @_;
    die "Missing parameters in ticked call"
      if ( !defined($darkness_threshold_up) );
    return (
        $self->sql_single(
            $self->statement('ticked'), $darkness_threshold,
            $darkness_threshold_up,     $student,
            $copy,                      ZONE_BOX,
            $question,                  $answer
        )
    );
}

# ticked_sums($darkness_threshold,$darkness_threshold_up) returns a
# ref to a list of hashrefs like
#
# [{'question=>1,answer=>1,nb=>4},
#  {'question=>1,answer=>'invalid',nb=>1},
#  {'question=>1,answer=>'empty',nb=>2},
# ]
#
# that gives, for each question, the number of times each answer was
# ticked, and the number of sheets where this question was not
# replied, and where this question got invalid answers.

sub ticked_sums {
    my ( $self, $darkness_threshold, $darkness_threshold_up ) = @_;
    die "Missing parameters in ticked_sums call"
      if ( !defined($darkness_threshold_up) );
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('tickedSums'), { Slice => {} },
            $darkness_threshold, $darkness_threshold_up,
            ZONE_BOX
        )
    );
}

# has_answer_zero($student,$copy,$question) returns true if the
# requested question has an answer "none of the above are correct".

sub has_answer_zero {
    my ( $self, $student, $copy, $question ) = @_;
    return (
        $self->sql_single(
            $self->statement('questionHasZero'),
            $student, $copy, ZONE_BOX, $question
        )
    );
}

# ticked_list($student,$copy,$question,$darkness_threshold,$darkness_threshold_up)
# returns a list with the ticked results for all the answers boxes
# from a particular question. Answers are ordered with the answer
# number, so that the answer "None of the above" (if present), with
# answer number 0, is placed at the beginning.

sub ticked_list {
    my ( $self, $student, $copy, $question, $darkness_threshold,
        $darkness_threshold_up )
      = @_;
    die "Missing parameters in ticked_list call"
      if ( !defined($darkness_threshold_up) );
    return (
        $self->sql_list(
            $self->statement('tickedList'), $darkness_threshold,
            $darkness_threshold_up,         $student,
            $copy,                          ZONE_BOX,
            $question
        )
    );
}

# ticked_chars($student,$copy,$question,$darkness_threshold,$darkness_threshold_up)
# returns a list with all the box labels (characters written inside or
# beside the box) from the ticked answers related to a particular
# question.

sub ticked_chars {
    my ( $self, $student, $copy, $question, $darkness_threshold,
        $darkness_threshold_up )
      = @_;
    die "Missing parameters in ticked_chars call"
      if ( !defined($darkness_threshold_up) );
    $self->{data}->require_module('layout');
    return (
        $self->sql_list(
            $self->statement('tickedChars'), $student,
            $copy,                           $question,
            ZONE_BOX,                        $darkness_threshold,
            $darkness_threshold_up,          $student,
            $question,                       BOX_ROLE_ANSWER
        )
    );
}

# Same as ticked_chars, but paste the chars if they all exist, and
# return undef otherwise

sub ticked_chars_pasted {
    my ( $self, @args ) = @_;
    my @c = $self->ticked_chars(@args);
    if ( grep { !defined($_) } @c ) {
        return (undef);
    } else {
        return ( join( "", @c ) );
    }
}

# ticked_list_0 id the same as ticked_list, but answer 0
# (corresponding to "None of the above") is placed at the end of the
# list.

sub ticked_list_0 {
    my ( $self, $student, $copy, $question, $darkness_threshold,
        $darkness_threshold_up )
      = @_;
    die "Missing parameters in ticked_list_0 call"
      if ( !defined($darkness_threshold_up) );
    my @tl =
      $self->ticked_list( $student, $copy, $question, $darkness_threshold,
        $darkness_threshold_up );
    if ( $self->has_answer_zero( $student, $copy, $question ) ) {
        my $zero = shift @tl;
        push @tl, $zero;
    }
    return (@tl);
}

# zones_count($student,$page,$copy,$type) returns the number of zones
# of type $type from a particular page.

sub zones_count {
    my ( $self, $student, $page, $copy, $type ) = @_;
    $type = POSITION_BOX if ( !$type );
    return (
        $self->sql_single(
            $self->statement('zonesCount'),
            $student, $page, $copy, $type
        )
    );
}

# zone_dist2($zoneid,$x,$y,$type) returns the mean of the square
# distance from the point ($x,$y) to the corners of a particular zone.

sub zone_dist2 {
    my ( $self, $zoneid, $x, $y, $type ) = @_;
    $type = POSITION_BOX if ( !$type );
    return (
        $self->sql_single(
            $self->statement('zoneDist'),
            $x, $x, $y, $y, $zoneid, $type
        )
    );
}

# zone_corner($zoneid,$corner,$type) returns the coordinates of a zone
# corner as a list (with two values).

sub zone_corner {
    my ( $self, $zoneid, $corner, $type ) = @_;
    $type = POSITION_BOX if ( !$type );
    return (
        $self->sql_row(
            $self->statement('zoneCorner'),
            $zoneid, $type, $corner
        )
    );
}

# set_corner($zoneid,$corner,$type,$x,$y) sets the coordinates of a
# corner of a zone (or the corner measuring zone, reduced from the
# original zone, depending on the $type parameter).

sub set_corner {
    my ( $self, $zoneid, $corner, $type, $x, $y ) = @_;
    $self->statement('NEWPosition')->execute( $zoneid, $corner, $x, $y, $type );
}

# zone_images($student,$copy,$type) returns a list of the image values
# of zones corresponding to $student,$value,$type.

sub zone_images {
    my ( $self, $student, $copy, $type ) = @_;
    return (
        $self->sql_list(
            $self->statement('zoneImage'), $student, $copy, $type
        )
    );
}

# set_layout_image($student,$page,$copy,$file) sets the name of the
# scan with drawings of the boxes image file.

sub set_layout_image {
    my ( $self, $student, $page, $copy, $file ) = @_;
    $self->statement('setLayout')->execute( $file, $student, $page, $copy );
}

# get_layout_image($student,$page,$copy) gets the name of the
# scan with drawings of the boxes image file.

sub get_layout_image {
    my ( $self, $student, $page, $copy ) = @_;
    return (
        $self->sql_single(
            $self->statement('getLayout'),
            $student, $page, $copy
        )
    );
}

# get_zones_images($student,$page,$copy,$type) returns a list of the image
# filenames extracted from the scan corresponding to the given page,
# with the given zone type.

sub get_zones_images {
    my ( $self, $student, $page, $copy, $type ) = @_;
    return (
        $self->sql_list(
            $self->statement('zonesImages'),
            $student, $page, $copy, $type
        )
    );
}

# set_annotated($student,$page,$copy,$file,$timestamp) sets the name
# of the annotated image file, and the time when it wad made.

sub set_annotated {
    my ( $self, $student, $page, $copy, $file, $timestamp ) = @_;
    $timestamp = time() if ( !$timestamp );
    $self->statement('setAnnotated')
      ->execute( $file, $timestamp, $student, $page, $copy );
}

# outdate_annotated_page($student,$page,$copy) sets the corresponding
# annotated page as outdated (can be used for example if ticked data
# has changed for this page).

sub outdate_annotated_page {
    my ( $self, $student, $page, $copy ) = @_;
    $self->statement('setAnnotatedPageOutdated')
      ->execute( $student, $page, $copy );
}

# outdate_annotated_copy($student,$copy) sets the corresponding
# annotated copy as outdated (can be used for example if ticked data
# has changed for this page).

sub outdate_annotated_copy {
    my ( $self, $student, $copy ) = @_;
    $self->statement('setAnnotatedCopyOutdated')->execute( $student, $copy );
}

# annotated_all_there($directory) returns TRUE if all pages with a
# automatic data capture have a JPEG annotated scan present in
# $directory.

sub annotated_all_there {
    my ( $self, $directory ) = @_;
    my @f  = $self->sql_list( $self->statement('getAnnotatedFiles') );
    my $ok = 1;
    for (@f) {
        if ($_) {
            $ok = 0 if ( !-f "$directory/$_" );
        } else {
            $ok = 0;
        }
    }
    return ($ok);
}

# get_annotated_page($student,$page,$copy) returns the annotated image
# filename of a particular page.

sub get_annotated_page {
    my ( $self, $student, $page, $copy ) = @_;
    my $f = $self->sql_single( $self->statement('getAnnotatedPage'),
        $student, $page, $copy );
    return ($f);
}

# annotated_count() returns the number of annotated sheets.

sub annotated_count {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('annotatedCount') ) );
}

# get_scan_page($student,$page,$copy) returns the scan image
# filename of a particular page.

sub get_scan_page {
    my ( $self, $student, $page, $copy ) = @_;
    my $f = $self->sql_single( $self->statement('getScanPage'),
        $student, $page, $copy );
    return ($f);
}

# max_copy_number returns the maximum copy number for all pages

sub max_copy_number {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('maxCopy') ) || 0 );
}

# max_answer_number returns the maximum answer number for all questions

sub max_answer_number {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('maxAnswer'), ZONE_BOX )
          || 0 );
}

# new_page_copy($student,$page,$allocate) creates a new (unused) copy
# number for a given question page. If $allocate is positive, returns
# $allocate if it is unused for this page, or the next unused number.

sub new_page_copy {
    my ( $self, $student, $page, $allocate ) = @_;
    if ($allocate) {
        my $a    = $allocate;
        my @used = $self->sql_list( $self->statement('pageCopies'),
            $student, $page, $allocate );
        while ( @used && $a == $used[0] ) {
            $a++;
            shift @used;
        }
        return ($a);
    } else {
        my $c = $self->sql_single( $self->statement('pageLastCopy'),
            $student, $page );
        if ($c) {
            return ( $c + 1 );
        } else {
            return (1);
        }
    }
}

# student_last_copy($student) returns the maximum copy number used for
# student $student

sub student_last_copy {
    my ( $self, $student ) = @_;
    return (
        $self->sql_single( $self->statement('studentLastCopy'), $student ) );
}

# set_manual(...,$type,$id_a,$id_b,$manual) sets the manual value for
# a particular zone.

sub set_manual {
    my ( $self, $student, $page, $copy, $type, $id_a, $id_b, $manual ) = @_;
    if (
        !$self->sql_single(
            $self->statement('zone'),
            $student, $page, $copy, $type, $id_a, $id_b
        )
      )
    {
        $self->statement('NEWZone')
          ->execute( $student, $page, $copy, $type, $id_a, $id_b );
    }
    $self->statement('setManual')
      ->execute( $manual, $student, $page, $copy, $type, $id_a, $id_b );
}

# remove_manual($student,$page,$copy) deletes all manual data capture
# information for a particular page.

sub remove_manual {
    my ( $self, $student, $page, $copy ) = @_;
    $self->statement('setManualPage')->execute( -1, $student, $page, $copy );
    $self->statement('setManualPageZones')
      ->execute( -1, $student, $page, $copy );
    if ( $self->page_zones_auto_count( $student, $page, $copy ) == 0 ) {
        $self->delete_page_data( $student, $page, $copy );
    }
}

# counts returns a hash %r giving the %r{complete} number of
# complete sheets captured, and the %r{incomplete} number of student
# sheets for which one part has been captured (with manual or
# automated data capture), and one other part needs capturing.
# Moreover, $r{missing} is a reference to an array containing
# {student=>XXX,page=>XXX,copy=>XXX} for all missing pages.

sub counts {
    my ($self) = @_;
    my %r   = ( incomplete => 0, complete => 0 );
    my %dup = ();
    $self->{data}->require_module('layout');
    $r{missing} =
      $self->dbh->selectall_arrayref( $self->statement('missingPages'),
        { Slice => {} } );
    for my $p ( @{ $r{missing} } ) {
        my $k = $p->{student} . "/" . $p->{copy};
        if ( !$dup{$k} ) {
            $r{incomplete}++;
            $dup{$k} = 1;
        }
    }
    $r{complete} = $self->n_copies() - $r{incomplete};
    return (%r);
}

# failed($filename,$timestamp) creates or updates a failed row for
# file $filename.

sub failed {
    my ( $self, $filename, $timestamp ) = @_;
    $timestamp = time if ( !$timestamp );
    $self->statement('Failed')->execute( $filename, $timestamp );
}

# no_capture_pages returns a reference to an array of elements
# [student,page,copy] for pages from the question paper that have not
# been captured (all with copy=0).

sub no_capture_pages {
    my ($self) = @_;
    return (
        $self->dbh->selectall_arrayref( $self->statement('noCapturePages') ) );
}

# no_capture_pages returns a reference to an array of elements
# [student,page,copy] for pages from the question paper that has boxes
# from the question but no boxes from the answer sheet (all with
# copy=0). The result is empty if not in separate answer sheet mode.

sub question_only_pages {
    my ($self) = @_;
    return (
        $self->dbh->selectall_arrayref( $self->statement('questionOnlyPages') )
    );
}

# delete_page_data($student,$page,$copy) deletes all data concerning
# the given page (automatic and manual data capture) from the database.

sub delete_page_data {
    my ( $self, $student, $page, $copy ) = @_;
    $self->statement('deletePagePositions')->execute( $student, $page, $copy );
    $self->statement('deletePageZones')->execute( $student, $page, $copy );
    $self->statement('deletePage')->execute( $student, $page, $copy );
}

# page_zones_auto_count($student,$page,$copy) returns the number of
# zones in page with automatic data capture.

sub page_zones_auto_count {
    my ( $self, $student, $page, $copy ) = @_;
    return (
        $self->sql_single(
            $self->statement('pageZonesAutoCount'),
            $student, $page, $copy, ZONE_BOX
        )
    );
}

# get_student_pages($student,$copy) returns an arrayref giving some
# information for all pages from sheet ($student,$copy). For example:
#
# [{page=>1,annotated=>'page-37-1.jpg',subjectpage=>181},
#  {page=>2,annotated=>undef,subjectpage=>182},
# ]
#
# For each page, a hashref contains:
# * page for the page number,
# * annotated for the filename of the annotated jpg, if present,
# * subjectpage for the page number from complete subject PDF file

sub get_student_pages {
    my ( $self, $student, $copy ) = @_;
    $self->{data}->require_module('layout');
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('pagesStudent'),
            { Slice => {} },
            $student, $student, $copy
        )
    );
}

# get_namefields() returns an arrayref giving, for each page with a
# namefield for which a capture has been made, the name of the
# namefield image if it exists.
#
# For example:
#
# [{student=>1,page=>3,copy=>1,image=>'name-1.jpg'},
#  {student=>1,page=>3,copy=>2,image=>undef},
# ]

sub get_namefields {
    my ($self) = @_;
    $self->{data}->require_module('layout');
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('nameFields'),
            { Slice => {} }, ZONE_NAME
        )
    );
}

# get_zones_bbox($student,$page,$copy,$zone_type) returns an arrayref
# giving, for each zone with type $zone_type (defaulting to ZONE_BOX)
# on scanned page ($student,$page,$copy), the bounding box on the scan.
#
# For example:
#
# [{question=>1,answer=>1,
#   xmin=>1646.92,xmax=>1684.57,ymin=>1608.12,ymax=>1645.38},
#  {question=>1,answer=>2,
#   xmin=>1591.68,xmax=>1629.33,ymin=>1517.17,ymax=>1554.43},
# ]

sub get_zones_bbox {
    my ( $self, $student, $page, $copy, $zone_type ) = @_;
    $zone_type = ZONE_BOX if ( !defined($zone_type) );
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('zonesBBox'),
            { Slice => {} },
            $student, $page, $copy, $zone_type, POSITION_BOX
        )
    );
}

# get_zones_corners($student,$page,$copy,$zone_type) returns an
# arrayref giving, for each zone with type $zone_type (defaulting to
# ZONE_BOX) on scanned page ($student,$page,$copy), the corners on the
# scan. In the resulting array, corners are ordered.
#
# For example:
#
# [{zoneid=>156,question=>1,answer=>1,x=>1646.92,y=>1608.12,corner=>1},
#  {zoneid=>156,question=>1,answer=>1,x=>1667.12,y=>1610.43,corner=>2},
#  ...
# ]

sub get_zones_corners {
    my ( $self, $student, $page, $copy, $zone_type ) = @_;
    $zone_type = ZONE_BOX if ( !defined($zone_type) );
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('zonesCorners'),
            { Slice => {} },
            $student, $page, $copy, $zone_type, POSITION_BOX
        )
    );
}

# n_photocopy() returns the number of captures made on a photocopy of
# the subject, that is made with mode 'Some sheets were photocopied'
# (these captures are identified by a positive 'copy' value).

sub n_photocopy {
    my ($self) = @_;
    return ( $self->sql_single( $self->statement('photocopy') ) );
}

# clear_all() clears all the layout data tables.

sub clear_all {
    my ($self) = @_;
    for my $t (qw/page zone position failed/) {
        $self->sql_do( "DELETE FROM " . $self->table($t) );
    }
}

# get_image_paths($type) returns an arrayref with image paths of all
# zones of type $type, like
#
# [{zoneid=>153,image=>"zone-image-001.png"},
#  ...
# ]

sub get_image_paths {
    my ( $self, $type ) = @_;
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('imagePaths'),
            { Slice => {} }, $type
        )
    );
}

# set_image($zoneid,$imagedata) sets the imagedata (the image content
# as a blob) for zone $zoneid.

sub set_image {
    my ( $self, $zoneid, $imagedata ) = @_;
    my $sth = $self->statement('setImage');
    $sth->bind_param( 1, $imagedata, SQL_BLOB );
    $sth->bind_param( 2, $zoneid );
    $sth->execute();
}

# zooms_total_size_transaction() returns the sum of all zooms
# images stored in the database, in bytes.

sub zooms_total_size_transaction {
    my ($self) = @_;
    $self->begin_read_transaction('ztsz');
    my $s = $self->sql_single( $self->statement('zoomsTotalSize'), ZONE_BOX );
    $self->end_transaction('ztsz');
    return ($s);
}

# zooms_cleanup_transaction() deletes all zooms images from the
# database.

sub zooms_cleanup_transaction {
    my ($self) = @_;
    $self->begin_transaction('zcln');
    my $n = $self->statement('zoomsCleanup')->execute(ZONE_BOX);
    $self->end_transaction('zcln');
    $self->vacuum();
    return ($n);
}

# Get zone images from a particular type, with timestamp of creation

sub zone_images_available {
    my ( $self, $type ) = @_;
    $type = ZONE_NAME if ( !$type );
    return (
        $self->dbh->selectall_arrayref(
            $self->statement('zoneImages'),
            { Slice => {} }, $type
        )
    );
}

1;
